- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Class | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | danRer5-96 | mir-24 | bta-miR-24 | 22/23 | chr2 | + | 15-37 | 28340209-28340293 | 0.94936 | Paralog | 19/35 | 6/74 |
2 | danRer5-96 | mir-24 | dre-miR-24 | 20/22 | chr2 | + | 52-71 | 28340210-28340292 | 0.845518 | Paralog | 19/35 | 6/74 |
3 | danRer5-96 | mir-24 | hsa-miR-24-1* | 21/22 | chr2 | + | 16-37 | 28340209-28340293 | 0.981033 | Paralog | 19/35 | 6/74 |
4 | danRer5-95 | mir-460 | oan-miR-460* | 20/21 | chr2 | + | 51-71 | 2113450-2113530 | 0.997528 | Paralog | 5/12 | 2/19 |
5 | danRer5-95 | mir-460 | dre-miR-460-3p | 22/22 | chr2 | + | 51-72 | 2113450-2113530 | 0.99327 | Paralog | 5/12 | 2/19 |
6 | danRer5-92 | mir-30 | hsa-miR-30c | 23/23 | chr19 | + | 16-38 | 38897455-38897540 | 0.999783 | Paralog | 21/38 | 7/186 |
7 | danRer5-92 | mir-30 | gga-miR-30c | 24/24 | chr19 | + | 16-39 | 38897455-38897540 | 0.999863 | Paralog | 21/38 | 7/186 |
8 | danRer5-92 | mir-30 | dre-miR-30c | 22/22 | chr19 | + | 15-36 | 38897456-38897539 | 0.99986 | Paralog | 21/38 | 7/186 |
9 | danRer5-90 | mir-30 | dre-miR-30e | 22/22 | chr19 | + | 7-28 | 38895545-38895620 | 0.998844 | Paralog | 21/38 | 7/186 |
10 | danRer5-90 | mir-30 | oan-miR-30e | 23/23 | chr19 | + | 8-30 | 38895544-38895621 | 0.998967 | Paralog | 21/38 | 7/186 |
11 | danRer5-90 | mir-30 | bta-miR-30a-5p | 23/24 | chr19 | + | 8-31 | 38895544-38895621 | 0.999376 | Paralog | 21/38 | 7/186 |
12 | danRer5-90 | mir-30 | xtr-miR-30a-3p | 21/22 | chr19 | + | 51-72 | 38895545-38895620 | 0.996627 | Paralog | 21/38 | 7/186 |
13 | danRer5-90 | mir-30 | gga-miR-30e | 19/19 | chr19 | + | 7-25 | 38895544-38895619 | 0.999075 | Paralog | 21/38 | 7/186 |
14 | danRer5-89 | mir-24 | mdo-miR-24 | 14/16 | chr19 | + | 36-49 | 6923457-6923552 | 0.950578 | Paralog | 19/35 | 6/74 |
15 | danRer5-84 | mir-129 | mmu-miR-129-5p | 21/21 | chr18 | + | 7-27 | 9058446-9058521 | 0.940672 | Paralog | 14/32 | 3/69 |
16 | danRer5-84 | mir-129 | dre-miR-129 | 22/22 | chr18 | + | 7-28 | 9058446-9058521 | 0.960736 | Paralog | 14/32 | 3/69 |
17 | danRer5-8 | mir-125 | bfl-miR-125b-as | 22/22 | chr10 | + | 51-72 | 33575898-33575981 | 0.943257 | Paralog | 45/62 | 9/195 |
18 | danRer5-78 | mir-107 | cfa-miR-107 | 19/21 | chr17 | - | 51-69 | 21164594-21164677 | 0.932268 | Paralog | 20/37 | 3/68 |
19 | danRer5-71 | mir-196 | dre-miR-196a | 21/22 | chr16 | - | 17-38 | 15968480-15968567 | 0.988151 | Paralog | 20/38 | 5/91 |
20 | danRer5-71 | mir-196 | xtr-miR-196b | 21/21 | chr16 | - | 15-35 | 15968481-15968565 | 0.991072 | Paralog | 20/38 | 5/91 |
21 | danRer5-7 | mir-212 | dre-miR-212 | 21/21 | chr10 | + | 51-71 | 32049915-32049989 | 0.986337 | Paralog | 11/15 | 2/21 |
22 | danRer5-68 | mir-138 | gga-miR-138 | 17/17 | chr16 | - | 34-50 | 4469739-4469840 | 0.990616 | Paralog | 14/29 | 4/56 |
23 | danRer5-68 | mir-138 | dre-miR-138 | 22/22 | chr16 | - | 36-57 | 4469736-4469842 | 0.875882 | Paralog | 14/29 | 4/56 |
24 | danRer5-61 | mir-125 | bfl-miR-125b-as | 22/22 | chr15 | - | 47-68 | 19056678-19056755 | 0.911232 | Paralog | 45/62 | 9/195 |
25 | danRer5-54 | mir-143 | oan-miR-143* | 22/23 | chr14 | - | 23-44 | 44528080-44528173 | 0.99713 | Paralog | 15/29 | 3/33 |
26 | danRer5-54 | mir-143 | xtr-miR-143 | 22/22 | chr14 | - | 49-70 | 44528086-44528165 | 0.999628 | Paralog | 15/29 | 3/33 |
27 | danRer5-54 | mir-143 | rno-miR-143 | 21/22 | chr14 | - | 49-69 | 44528086-44528165 | 0.999788 | Paralog | 15/29 | 3/33 |
28 | danRer5-50 | mir-145 | dre-miR-145 | 22/22 | chr14 | - | 14-35 | 44318425-44318509 | 0.998499 | Paralog | 15/29 | 2/32 |
29 | danRer5-50 | mir-145 | mmu-miR-145 | 23/23 | chr14 | - | 14-36 | 44318425-44318509 | 0.999229 | Paralog | 15/29 | 2/32 |
30 | danRer5-50 | mir-145 | mmu-miR-145* | 22/22 | chr14 | - | 49-70 | 44318431-44318503 | 0.999981 | Paralog | 15/29 | 2/32 |
31 | danRer5-50 | mir-145 | oan-miR-145* | 21/21 | chr14 | - | 50-70 | 44318431-44318504 | 0.999978 | Paralog | 15/29 | 2/32 |
32 | danRer5-50 | mir-145 | hsa-miR-145* | 22/22 | chr14 | - | 49-70 | 44318430-44318505 | 0.999974 | Paralog | 15/29 | 2/32 |
33 | danRer5-50 | mir-145 | oan-miR-145 | 19/19 | chr14 | - | 12-30 | 44318427-44318507 | 0.999795 | Paralog | 15/29 | 2/32 |
34 | danRer5-50 | mir-145 | ssc-miR-145 | 24/24 | chr14 | - | 14-37 | 44318425-44318509 | 0.999542 | Paralog | 15/29 | 2/32 |
35 | danRer5-39 | mir-461 | dre-miR-461 | 20/22 | chr14 | - | 15-35 | 8644308-8644392 | 0.991468 | Paralog | 1/3 | 2/4 |
36 | danRer5-344 | mir-103 | hsa-miR-103-as | 23/23 | Zv7_scaffold2623 | - | 11-33 | 493943-494024 | 0.997343 | Paralog | 21/38 | 4/118 |
37 | danRer5-343 | mir-107 | cfa-miR-107 | 21/21 | Zv7_scaffold2623 | + | 50-70 | 493944-494025 | 0.99817 | Paralog | 20/37 | 3/68 |
38 | danRer5-343 | mir-103 | dre-miR-103 | 23/23 | Zv7_scaffold2623 | + | 50-72 | 493944-494025 | 0.99757 | Paralog | 21/38 | 4/118 |
39 | danRer5-334 | mir-199 | mmu-miR-199a-3p | 22/22 | Zv7_scaffold2501 | - | 49-70 | 27380-27456 | 0.999916 | Paralog | 22/39 | 5/87 |
40 | danRer5-334 | mir-199 | dre-miR-199 | 23/23 | Zv7_scaffold2501 | - | 14-36 | 27376-27460 | 0.998727 | Paralog | 22/39 | 5/87 |
41 | danRer5-334 | mir-199 | dre-miR-199* | 22/22 | Zv7_scaffold2501 | - | 49-70 | 27379-27457 | 0.999944 | Paralog | 22/39 | 5/87 |
42 | danRer5-334 | mir-199 | bta-miR-199a-5p | 22/22 | Zv7_scaffold2501 | - | 14-35 | 27376-27460 | 0.999332 | Paralog | 22/39 | 5/87 |
43 | danRer5-334 | mir-199 | gga-miR-199* | 20/20 | Zv7_scaffold2501 | - | 50-69 | 27378-27458 | 0.99992 | Paralog | 22/39 | 5/87 |
44 | danRer5-334 | mir-199 | oan-miR-199 | 21/21 | Zv7_scaffold2501 | - | 50-70 | 27379-27457 | 0.999926 | Paralog | 22/39 | 5/87 |
45 | danRer5-329 | mir-19 | cfa-miR-19b | 22/22 | Zv7_NA884 | + | 51-72 | 159561-159644 | 0.999817 | Paralog | 25/43 | 6/128 |
46 | danRer5-329 | mir-19 | dre-miR-19b | 23/23 | Zv7_NA884 | + | 50-72 | 159562-159643 | 0.999737 | Paralog | 25/43 | 6/128 |
47 | danRer5-326 | mir-19 | mmu-miR-19a* | 22/22 | Zv7_NA884 | + | 13-34 | 159278-159359 | 0.999612 | Paralog | 25/43 | 6/128 |
48 | danRer5-326 | mir-19 | dre-miR-19a* | 22/22 | Zv7_NA884 | + | 11-32 | 159279-159358 | 0.998508 | Paralog | 25/43 | 6/128 |
49 | danRer5-326 | mir-19 | oan-miR-19a* | 21/21 | Zv7_NA884 | + | 13-33 | 159278-159359 | 0.999719 | Paralog | 25/43 | 6/128 |
50 | danRer5-326 | mir-19 | hsa-miR-19a* | 22/22 | Zv7_NA884 | + | 16-37 | 159276-159360 | 0.99888 | Paralog | 25/43 | 6/128 |
51 | danRer5-326 | mir-19 | dre-miR-19a | 23/23 | Zv7_NA884 | + | 49-71 | 159278-159359 | 0.999053 | Paralog | 25/43 | 6/128 |
52 | danRer5-312 | mir-128 | mmu-miR-128 | 21/21 | Zv7_NA3315 | - | 50-70 | 4175-4255 | 0.997302 | Paralog | 19/36 | 3/66 |
53 | danRer5-312 | mir-128 | dre-miR-128 | 22/22 | Zv7_NA3315 | - | 49-70 | 4176-4254 | 0.998546 | Paralog | 19/36 | 3/66 |
54 | danRer5-290 | mir-724 | dre-miR-724 | 22/22 | chr8 | + | 11-32 | 22487771-22487850 | 0.832825 | Paralog | 1/6 | 2/11 |
55 | danRer5-286 | mir-222 | hsa-miR-222 | 20/21 | chr6 | - | 50-70 | 59071366-59071451 | 0.935565 | Paralog | 14/31 | 2/40 |
56 | danRer5-284 | mir-193 | dre-miR-193a | 22/22 | chr6 | - | 49-70 | 42694335-42694415 | 0.996065 | Paralog | 19/36 | 5/55 |
57 | danRer5-284 | mir-193 | mdo-miR-193 | 21/21 | chr6 | - | 50-70 | 42694334-42694416 | 0.992269 | Paralog | 19/36 | 5/55 |
58 | danRer5-283 | mir-429 | xla-miR-429 | 19/21 | chr6 | - | 50-69 | 27506446-27506528 | 0.99578 | Paralog | 13/25 | 2/27 |
59 | danRer5-281 | mir-727 | dre-miR-727 | 20/22 | chr6 | - | 48-67 | 24269492-24269566 | 0.965791 | Paralog | 1/6 | 2/10 |
60 | danRer5-280 | mir-728 | dre-miR-728 | 22/22 | chr6 | - | 49-70 | 24267075-24267150 | 0.820063 | Paralog | 1/5 | 2/7 |
61 | danRer5-28 | mir-103 | hsa-miR-103-as | 23/23 | chr13 | + | 10-32 | 18114124-18114203 | 0.988078 | Paralog | 21/38 | 4/118 |
62 | danRer5-275 | mir-152 | fru-miR-152 | 20/22 | chr6 | + | 51-71 | 9923337-9923418 | 0.998395 | Paralog | 11/27 | 2/43 |
63 | danRer5-27 | mir-138 | gga-miR-138 | 15/17 | chr13 | + | 49-63 | 13960486-13960579 | 0.97899 | Paralog | 14/29 | 4/56 |
64 | danRer5-267 | mir-125 | bfl-miR-125b-as | 22/22 | chr5 | - | 49-70 | 21781734-21781811 | 0.998409 | Paralog | 45/62 | 9/195 |
65 | danRer5-263 | mir-199 | mmu-miR-199a-3p | 22/22 | chr5 | + | 51-72 | 56949465-56949545 | 0.999912 | Paralog | 22/39 | 5/87 |
66 | danRer5-263 | mir-199 | dre-miR-199* | 22/22 | chr5 | + | 51-72 | 56949464-56949547 | 0.999906 | Paralog | 22/39 | 5/87 |
67 | danRer5-263 | mir-199 | oan-miR-199 | 21/21 | chr5 | + | 51-71 | 56949465-56949545 | 0.999874 | Paralog | 22/39 | 5/87 |
68 | danRer5-263 | mir-199 | gga-miR-199* | 20/20 | chr5 | + | 52-71 | 56949463-56949548 | 0.999824 | Paralog | 22/39 | 5/87 |
69 | danRer5-263 | mir-199 | bta-miR-199a-5p | 22/22 | chr5 | + | 12-33 | 56949465-56949545 | 0.998307 | Paralog | 22/39 | 5/87 |
70 | danRer5-263 | mir-199 | dre-miR-199 | 23/23 | chr5 | + | 12-34 | 56949465-56949545 | 0.996508 | Paralog | 22/39 | 5/87 |
71 | danRer5-255 | mir-138 | gga-miR-138 | 15/17 | chr4 | + | 54-68 | 42447034-42447137 | 0.978523 | Paralog | 14/29 | 4/56 |
72 | danRer5-241 | mir-722 | dre-miR-722 | 24/24 | chr3 | + | 50-73 | 9241352-9241430 | 0.997677 | Paralog | 1/4 | 2/8 |
73 | danRer5-240 | mir-338 | dre-miR-338 | 22/22 | chr3 | + | 51-72 | 7797706-7797789 | 0.999777 | Paralog | 12/22 | 5/36 |
74 | danRer5-233 | mir-140 | mne-miR-140 | 19/21 | chr25 | + | 9-28 | 28789418-28789489 | 0.998957 | Paralog | 15/31 | 2/51 |
75 | danRer5-232 | let-7 | spu-let-7 | 21/22 | chr25 | + | 2-23 | 1414907-1414977 | 0.977393 | Paralog | 44/65 | 19/337 |
76 | danRer5-232 | let-7 | aga-let-7 | 20/21 | chr25 | + | 2-22 | 1414907-1414977 | 0.96303 | Paralog | 44/65 | 19/337 |
77 | danRer5-222 | mir-499 | xtr-miR-499 | 23/23 | chr23 | + | 13-35 | 16586874-16586956 | 0.99998 | Paralog | 11/30 | 2/32 |
78 | danRer5-222 | mir-499 | oan-miR-499 | 20/21 | chr23 | + | 12-32 | 16586875-16586955 | 0.999978 | Paralog | 11/30 | 2/32 |
79 | danRer5-222 | mir-499 | dre-miR-499 | 22/22 | chr23 | + | 12-33 | 16586875-16586955 | 0.999983 | Paralog | 11/30 | 2/32 |
80 | danRer5-221 | mir-1 | mmu-miR-1-2-as | 21/21 | chr23 | + | 10-30 | 5178735-5178813 | 0.990322 | Paralog | 41/61 | 3/166 |
81 | danRer5-217 | mir-181 | ssc-miR-181b | 24/24 | chr22 | + | 11-34 | 16708869-16708947 | 0.997786 | Paralog | 22/39 | 6/168 |
82 | danRer5-217 | mir-181 | hsa-miR-181b | 23/23 | chr22 | + | 11-33 | 16708869-16708947 | 0.99676 | Paralog | 22/39 | 6/168 |
83 | danRer5-217 | mir-181 | cfa-miR-181b | 20/20 | chr22 | + | 11-30 | 16708869-16708947 | 0.9972 | Paralog | 22/39 | 6/168 |
84 | danRer5-217 | mir-181 | dre-miR-181b | 22/22 | chr22 | + | 11-32 | 16708869-16708947 | 0.994573 | Paralog | 22/39 | 6/168 |
85 | danRer5-12 | mir-196 | dre-miR-196a | 21/22 | chr11 | + | 16-37 | 577340-577424 | 0.997577 | Paralog | 20/38 | 5/91 |
86 | danRer5-12 | mir-196 | gga-miR-196 | 20/21 | chr11 | + | 16-36 | 577340-577424 | 0.998461 | Paralog | 20/38 | 5/91 |
Total | 86 record(s). |